上海大气降水中细菌气溶胶的多样性研究

采用分子生物学技术16S rRNA克隆文库方法,以上海市2012年不同月份的大气降水样品为模板构建细菌16S rRNA克隆文库,对连续5个月的大气降水样品中细菌群落结构组成及多样性进行了研究,并对其群落结构的生物多样性、物种丰度及覆盖率等进行了分析比较.结果表明,变形菌门(Proteobacteria)(α-,β-,γ-)是上海市降水样品中细菌的优势菌群(32.5%~94.1%),另外还包括拟杆菌门(Bacteroidetes)、放线菌门(Actinobacteria)、异常球菌-栖热菌门(Deinococcus-Thermus)、蓝藻门(Cyanobacteria)、酸杆菌门(Acidobacteria)、厚壁菌门(Firmicutes)共7个主要门类的细菌,以及未定菌(TM7).多样性指数分析结果显示,不同月份降水样品的细菌群落结构组成与多样性均存在着差异性,夏季6月样品的细菌群落生物多样性及物种丰度明显高于其它样品,其次是秋季8月的样品.     

Genetic Bottlenecks Driven by Population Disconnection

Abstract: Connectivity among populations plays a crucial role in maintaining genetic variation at a local scale, especially in small populations affected strongly by genetic drift. The negative consequences of population disconnection on allelic richness and gene diversity (heterozygosity) are well recognized and empirically established. It is not well recognized, however, that a sudden drop in local effective population size induced by such disconnection produces a temporary disequilibrium in allelic frequency distributions that is akin to the genetic signature of a demographic bottleneck. To document this effect, we used individual‐based simulations and empirical data on allelic richness and gene diversity in six pairs of isolated versus well‐connected (core) populations of European tree frogs. In our simulations, population disconnection depressed allelic richness more than heterozygosity and thus resulted in a temporary excess in gene diversity relative to mutation drift equilibrium (i.e., signature of a genetic bottleneck). We observed a similar excess in gene diversity in isolated populations of tree frogs. Our results show that population disconnection can create a genetic bottleneck in the absence of demographic collapse.     

Bacterial diversity in paclobutrazol applied agricultural soils

The aim of this study was to investigate the bacterial communities on paclobutrazol [(2RS, 3RS)-1-(4-Chlorophenyl)-4, 4-dimethyl-2-(1H-1,2,4-triazol-1-yl) pentan-3-ol]–applied agricultural soils by denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction (PCR) amplified 16S rDNA gene fragments. Three different agricultural soil samples were collected from paclobutrazol applied mango and waxapple orchards, peanut fields and untreated rice fields as a control for DGGE analysis. The DGGE pattern of PCR- generated 16S rDNA gene fragments indicated that the bacterial populations from four paclobutrazol–applied soils of peanut fields were closely related to each other and two paclobutrazol–applied soils of mango and waxapple orchards harbored closely related bacterial communities. But, paclobutrazol–free agricultural soils comprised relatively a different bacterial group. However, the bacterial populations of mango and waxapple orchard are completely different from the bacterial communities of peanut field. Further purification and sequence analysis of 40 DGGE bands followed by phylogenetic tree assay showed similar results that soil bacteria from paclobutrazol applied mango and waxapple orchard are phylogenetically related. Based on the phylogenetic analysis, the clone M-4 was clad 100 % (bootstrap value) with Mycobacterium sp. The Mycobacterium sp. has been proved to degrade the phenolic compounds such as phenol, 4-chlorphenol, 2,4-dichlorophenol and paclobutrazol molecule containing chlorobenzene ring.     

滇西北高原生态恢复过程中土壤侵蚀特征及其影响因子

滇西北高原由于地处生态脆弱的石灰岩区,水土流失严重,探讨该区生态恢复过程中土壤侵蚀的变化规律,为开展人工植被建设提供依据。以时空互代的方法,通过径流小区,对坡面的产沙产流特性及其影响因素进行研究。结果表明:天然次生林和人工混交林均有较好的调节径流和减少泥沙的作用,产沙量分别比坡耕地减少了51.46%、43.18%,产流量也相应降低了39.39%、24.24%。在最大次降雨条件下,荒草丛、坡耕地、次生林和混交林单次降雨的产沙量分别占试验期产沙总量的55.38%、55.58%、58.35%和58.05%,产流量相应占产流总量的64.72%、64.63%、73.85%和55.39%。而且,产流产沙量与土壤有机质质量分数均存在明显正相关,与乔、灌层植物多样性及均匀度指数等呈显著负相关性(P<0.05)。因此,乔灌草结合的群落结构配置模式是滇西北地区水土保持林营造的目标和方向。     

基于星座图法的湖北省农业功能分区

农业功能分区是准确把握县域农业功能定位、推动区域农业功能拓展和向现代农业转型的基础工作。旨在探索运用一种新的分类方法即星座图法在农业功能分区中的应用。剖析现代农业的功能定位问题，从农产品供应、就业与社会保障、生态调节和文化传承与休闲4大类综合功能选取30个定量指标和2个定性指标，构建了湖北省农业功能分区指标体系。采用星座图法，根据星座图中各星点的位置，确定各县（市）单项功能的分等类型；并以此为基础结合分区单元的实际地理位置和社会经济及环境现状，作出湖北省农业功能分区方案。分区结果以县级行政区域为分区单元，按照农业功能分区的基本原则，湖北省分4个农业主导功能区，各主导功能区分为3个二级区共12个二级农业功能区     

缙云山银木荷(Schima argentea Pritz.ex Diels)林物种组成与多样性变化

定位研究了25a来缙云山银木荷林物种组成及多样性在自然演替过程中的动态变化。结果表明,银木荷林维管植物物种由57种(隶属于24科,46属)减少到38种(隶属于19科,26属)。林下草本和层间植物逐渐消失,胸径大于7.5cm的乔木层树总胸断面积有所减少。尽管群落物种组成以及多样性发生改变,但是银木荷依然是优势树种,处于林冠层,而林冠亚层的白毛新木姜子、四川山矾、长蕊杜鹃逐渐增多,短刺米槠逐渐减少。群落乔木层4个α多样性指数都呈下降趋势,丰富度指数由2.98下降为1.99,Shannon-Wiener指数25a间减小了0.34,Simpson指数和Pielou指数变化都很小;β多样性分析结果显示,银木荷群落的物种差异很大。研究表明,25a间群落物种差异显著。揭示缙云山银木荷林自然演替过程中的物种组成和多样性变化规律,可为缙云山保护区及长江流域中上游亚热带常绿阔叶林的银木荷群落的管理提供一定的参考价值。     

Metabolic diversity of the heterotrophic microorganisms and potential link to pollution of the Rouge River

The heterotrophic microbial communities of the Rouge River were tracked using Biolog Ecoplates to understand the metabolic diversity at different temporal and spatial scales, and potential link to river pollution. Site less impacted by anthrophogenic sources (site 1), showed markedly lower metabolic diversity. The only substrates that were utilized in the water samples were carbohydrates. Sites more impacted by anthrophogenic sources (sites 8 and 9) showed higher metabolic diversity. Higher functional diversity was linked to the physico-chemical and biological properties of the water samples (i.e. higher concentrations of DO, DOC, chlorophyll, and bacterial density). Biolog analysis was found to be useful in differentiating metabolic diversity between microbial communities; in determining factors that most influence the separation of communities; and in identifying which substrates were most utilized by the communities. It can also be used as an effective ecological indicator of changes in river function attributable to urbanization and pollution.     

祁连山北坡自然恢复杨桦林地植物功能型组成及其影响因素

依据生活型(乔木、藤本、灌木、半灌木、多年生禾草、多年生杂类草和一二年生草本)和水分生态型(旱生、旱中生、中生和湿生)将祁连山北坡次生杨桦林28个调查样地中的81个物种划分为18种植物功能型(Plant functiontypes,PFTs),并通过典范对应分析(CCA)方法研究植物功能型与环境因子间的关系.结果表明:自然恢复杨桦林地植物功能型主要集中在中生多年生杂类草(PFTs16)、湿生多年生杂类草(PFTs23)、旱中生多年生杂类草(PFTs9)和中生灌木(PFTs18)4个植物功能型上;乔、灌、草三层冠层特征和中生植物的大量出现,反映了群落植物生活型趋于复杂化和结构化,生态型逐渐向中生化方向演替的特点;土壤容重、有机碳和全氮含量主要影响植物的生活型分异特征,土壤含水量和林冠郁闭度是植物的水分生态型分异的主要环境因子,而坡位、坡度控制着群落植物总体分布格局的形成.图1表3参31     

Pseudoreplication in Tropical Forests and the Resulting Effects on Biodiversity Conservation

Tropical forest ecosystems are threatened by habitat conversion and other anthropogenic actions. Timber production forests can augment the conservation value of primary forest reserves, but studies of logging effects often yield contradictory findings and thus inhibit efforts to develop clear conservation strategies. We hypothesized that much of this variability reflects a common methodological flaw, simple pseudoreplication, that confounds logging effects with preexisting spatial variation. We reviewed recent studies of the effects of logging on biodiversity in tropical forests (n = 77) and found that 68% were definitively pseudoreplicated while only 7% were definitively free of pseudoreplication. The remaining proportion could not be clearly categorized. In addition, we collected compositional data on 7 taxa in 24 primary forest research plots and systematically analyzed subsets of these plots to calculate the probability that a pseudoreplicated comparison would incorrectly identify a treatment effect. Rates of false inference (i.e., the spurious detection of a treatment effect) were >0.5 for 2 taxa, 0.3–0.5 for 2 taxa, and <0.3 for 3 taxa. Our findings demonstrate that tropical conservation strategies are being informed by a body of literature that is rife with unwarranted inferences. Addressing pseudoreplication is essential for accurately assessing biodiversity in logged forests, identifying the relative merits of specific management practices and landscape configurations, and effectively balancing conservation with timber production in tropical forests. Pseudoreplicación en Bosques Tropicales y Efectos Resultantes Sobre la Conservación de Biodiversidad     

Virtual Garden Computer Program for use in Exploring the Elements of Biodiversity People Want in Cities

Urban ecology is emerging as an integrative science that explores the interactions of people and biodiversity in cities. Interdisciplinary research requires the creation of new tools that allow the investigation of relations between people and biodiversity. It has been established that access to green spaces or nature benefits city dwellers, but the role of species diversity in providing psychological benefits remains poorly studied. We developed a user‐friendly 3‐dimensional computer program (Virtual Garden [ www.tinyurl.com/3DVirtualGarden ]) that allows people to design their own public or private green spaces with 95 biotic and abiotic features. Virtual Garden allows researchers to explore what elements of biodiversity people would like to have in their nearby green spaces while accounting for other functions that people value in urban green spaces. In 2011, 732 participants used our Virtual Garden program to design their ideal small public garden. On average gardens contained 5 different animals, 8 flowers, and 5 woody plant species. Although the mathematical distribution of flower and woody plant richness (i.e., number of species per garden) appeared to be similar to what would be expected by random selection of features, 30% of participants did not place any animal species in their gardens. Among those who placed animals in their gardens, 94% selected colorful species (e.g., ladybug [Coccinella septempunctata], Great Tit [Parus major], and goldfish), 53% selected herptiles or large mammals, and 67% selected non‐native species. Older participants with a higher level of education and participants with a greater concern for nature designed gardens with relatively higher species richness and more native species. If cities are to be planned for the mutual benefit of people and biodiversity and to provide people meaningful experiences with urban nature, it is important to investigate people's relations with biodiversity further. Virtual Garden offers a standardized tool with which to explore these relations in different environments, cultures, and countries. It can also be used by stakeholders (e.g., city planners) to consider people's opinions of local design. Programa de Computadora de Jardín Virtual para Uso en la Exploración de los Elementos de Biodiversidad que la Gente Desea en las Ciudades